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add_rules()
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Function called if rule for gene did not exist and thus needs to be added |
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check_cell_type()
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Checking whether a valid cell type was supplied by the user |
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classify_all()
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Generate nearest neighbor per sample |
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generate_sample_info()
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Generate sample info data frame |
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get_all_rules()
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Function to get all rules in a given sample |
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initialize_app_env()
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Populate the app environment |
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lc_vis()
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Visualize and annotate single cell data |
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run_classification()
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Generate nearest neighbor per sample |
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run_nn()
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Generate nearest neighbor per sample |
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smoothed_fraction()
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function to calculate the fraction smoothed over nearest neighbors |
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smoothed_fraction_wrapper()
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Wrapper calling smoothed_fraction function and adding the result to the app environment |
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update_new_class()
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Function called if new class is created in a sample |
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update_annotation()
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Function called after rules was added/deleted to update the cell type annotation |
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update_classification()
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Update classification |
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update_new_sample()
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Update upon selection of new sample |
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update_rule()
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Function called if rule for gene exists and thus needs to be updated |