smoothed_fraction.Rdfunction to calculate the fraction smoothed over nearest neighbors
smoothed_fraction(counts, marker, selection, nn_subset, gamma)
| counts | sparse matrix, containing counts (cols = cells, genes = rows) |
|---|---|
| marker | string, selected marker gene |
| selection | logical array, used to subset cells belonging to the selected sample |
| nn_subset | list, nearest neighbor indices and distances for cells in the sample |
| gamma | numeric, gamma-correction factor |